Compiling WRF 3.9.1.1 on Shaheen III

The following steps demonstrate compilation of WRF version 3.9.1.1 on Shaheen III:

wget https://www2.mmm.ucar.edu/wrf/src/WRFV3.9.1.1.TAR.gz
tar xfz WRFV3.9.1.1.TAR.gz
cd WRFV3
export prgenv=gnu
export jarg=1
module switch PrgEnv-cray PrgEnv-gnu
module load cray-hdf5
module load cray-netcdf
module load cray-parallel-netcdf
module load craype-hugepages4M
module load flex
export HDF5=$HDF5_DIR
export PHDF5=$HDF5_DIR
export NETCDF=$NETCDF_DIR
export PNETCDF=$PNETCDF_DIR
export PNETCDF_QUILT=1
export IBM_REDUCE_BUG_WORKAROUND=1
export WRFIO_NCD_LARGE_FILE_SUPPORT=1
export EM_CORE=1
#export WRF_CHEM=1
#export WRF_KPP=1
export FLEX_LIB_DIR=/sw/ex109genoa/flex/2.6.4/lib/
export JASPERLIB=/usr/lib64
export JASPERINC=/usr/include
export YACC="yacc -d"
case $prgenv in
gnu) conf=35;;
esac
./configure << CONFEOF
$conf
1
CONFEOF
sed -ie  's/^FCNOOPT[[:blank:]]*=[[:blank:]]*/&  -fallow-argument-mismatch -fallow-invalid-boz /' configure.wrf
sed -ie  's/^FCBASEOPTS_NO_G[[:blank:]]*=[[:blank:]]*/&  -fallow-argument-mismatch -fallow-invalid-boz /' configure.wrf
sed -ie  's/^LIB[[:blank:]]*=[[:blank:]]*/&  -ltirpc /' configure.wrf
time ./compile -j ${jarg} em_real > compile-$prgenv.log 2>&1