Checkout, Frequently Asked Questions!

Ibex#

Compilers#

System Build

App

Version

Compiler

rl9g

cuda

12.2

rl9_binary

rl9c

R

4.0.0

rl9_gnu12.2.0

rl9c

java

8u162

rl9_binary

rl9c

java

19.0.1

rl9_binary

rl9g

cmake

3.24.2

rl9_intel22

rl9c

R

4.3.2

rl9_gnu12.2.0

rl9c

perl

5.36.0

rl9_gnu12.2.0

rl9g

mpich

4.0.3

rl9_gnu11.2.1_cuda11.8

rl9c

python

3.9.16

rl9_gnu11.3.1

rl9g

cuda

11.7.1

rl9_binary

rl9g

openmpi

4.1.4

rl9_intel2022.3_cuda11.8

rl9c

R

4.2.2

rl9_gnu12.2.0

rl9c

openmpi

4.1.4

rl9_gnu11.2.1

rl9c

python

2.7.18

linux-rocky9-zen2

rl9g

gcc

11.1.0

rl9_binary

rl9g

gcc

11.2.0

rl9_binary

rl9g

cuda

11.8

rl9_binary

rl9g

openmpi

4.1.4

rl9_gnu11.2.1_cuda11.8

rl9g

gcc

11.3.0

rl9_binary

rl9c

perl

5.38.0

rl9_intel2022.3

rl9g

intel

2022

rl9_binary

rl9c

python

2.7.18

rl9_gnu11.1.0

rl9c

python

2.7.18

rl9_gnu12.2.0

rl9c

R

4.3.0

rl9_gnu12.2.0

rl9g

python

3.12.1

rl9_gnu11.3.0

rl9g

cmake

3.24.2

rl9_gnu-11.2.1

rl9c

python

3.11.0

rl9_gnu12.2.0

rl9c

mpich

4.0.3

rl9_intel2022.3

rl9c

mpich

4.0.3

rl9_gnu11.2.1

rl9c

openmpi

4.1.4

rl9_intel2022.3

rl9g

gcc

12.2.0

rl9_binary

Optimized Librarires#

System Build

App

Version

Compiler

rl9g

elpa

2022.11.001

openmpi4.1.4-cuda11.8

rl9g

pnetcdf

1.12.3

rl9_openmpi4.1.4

rl9c

netcdf-c

4.9.0

rl9_intel2022.3

rl9c

gmp

6.2.1

rl9_gnu12.2.0

rl9c

netcdf-python

1.6.1

rl9_mpich4.0.3_netcdf

rl9c

netcdf

4.9.1

ompi414_intel22

rl9g

nccl

2.17.1

cuda11.7

rl9c

openblas

0.3.21

rl9_gnu12.2.2

rl9c

wannier90

3.1.0

rl9_intel2022.3

rl9g

netcdf-c

4.9.0

rl9_gnu12.2.0

rl9c

eigen

3.4.0

rl9_gnu12.2.0

rl9c

proj

9.1.1

rl9_gnu12.2.0

rl9g

netcdf

4.9.1

rl9_openmpi4.1.4_intel22

rl9g

nccl

2.17.1

cuda11.8

rl9g

netcdf-fortran

4.6.0

rl9_gnu12.2.0

rl9c

netcdf-fortran

4.6.0

rl9_intel2022.3

rl9c

proj

9.1.1

rl9_anaconda3env

rl9c

hypre

2.27.0

rl9_gnu12.2.0

rl9c

wannier90

3.1.0

rl9_intel2022.3_openmpi4.1.4

rl9c

mpi4py

3.1.4

rl9_gnu12.2.0

rl9c

mpi4py

3.1.4

rl9_openmpi4.1.4_python3.11.0

Computational Chemistry#

System Build

App

Version

Compiler

rl9g

greasy

2.2.3

openmpi4.1.4_gnu11.2.1_cuda11.8

rl9c

vasp

6.4.2

ompi414_intel22

rl9c

gromacs

2023

rl9_openmpi4.1.4-sp

rl9c

octopus

12.0

ompi414_intel22

rl9c

parmetis

4.0.3

ompi414_intel22

rl9c

thirdorder

1.1.1

rl9_miniconda3_python2.7.18

rl9c

gromacs

2023.1

rl9_openmpi4.1.4-sp

rl9c

materialstudio

2023

rl9_binary

rl9c

lammps

2Aug2023

openmpi-4.1.4_intel2022.3

rl9c

quantumespresso

7.0

rl9_openmpi4.1.4_intel2022.3

rl9c

lammps

15sep2022

openmpi-4.1.4_intel2022.3

rl9c

cp2k

2022.2

rl9_gnu12.2.0

rl9c

molden

6.9

rl9_gnu12.2.0

rl9g

gromacs

2023.3

rl9_openmpi4.1.4_cuda

rl9c

lammps

21Nov2023

openmpi-4.1.4_intel2022.3

rl9c

siesta

psml204

ompi414_intel22

rl9g

gromacs

2023.3

rl9_intelmpi_cuda11.8

rl9c

cantera

2.6.0

rl9_anaconda3env

rl9c

polyrate

17-C

ompi414_intel22

rl9c

zeo++

0.3

rl9_gnu11.2.1

rl9c

ambertools

22

rl9_openmpi4.1.4

rl9c

quantumespresso

7.2

rl9_openmpi4.1.4_intel2022.3

rl9g

parmetis

4.0.3

rl9_openmpi4.1.4_intel22

rl9c

namd

2.14

rl9_intel2022.3

rl9g

gromacs

2023.2

rl9_openmpi4.1.4_cuda11.8

rl9c

shengbte

1.2.0

rl9_openmpi4.1.4-intel2022.3

rl9g

gromacs

2023.2

rl9_openmpi4.1.4_cuda

rl9g

xcrysden

1.6.2

rl9_binary

rl9g

quantumespresso

7.1

rl9_nvhpc23.1

rl9c

amset

0.4.18

rl9_miniconda3

rl9c

uspex

10.5

rl9_binary

rl9c

vasp

6.3.1

ompi414_intel22

rl9g

gromacs

2023

rl9_openmpi4.1.4_cuda

rl9c

p4vasp

0.3.30

rl9_singularity

rl9c

lammps

21Nov2023

openmpi-4.1.4_gnu12.2.0

rl9g

ambertools

22

rl9_openmpi4.1.4_cuda11.8

rl9c

greasy

2.2.3

rl9_openmpi4.1.4

rl9c

molpro

2012.1p16

ompi414_intel22

rl9c

parmetis

4.0.3

rl9_gnu12.2.0

rl9g

vasp

5.4.4

v100-cuda11.8

rl9c

vasp

5.4.4

ompi414_intel22

rl9g

octopus

12.0

rl9_openmpi4.1.4-intel2022-cuda11.8

rl9g

vasp

6.4.2

v100-nvhpc23.1

rl9c

packmol

20.11.1

rl9_gnu12.2.0

rl9c

metis

5.1.0

rl9_gnu12.2.0

rl9c

phonopy

2.17.0

rl9_miniconda3

rl9c

siesta

4.1.5

ompi414_intel22

rl9c

molpro

2012.1p16

rl9_binary

rl9c

gromacs

2022.4

rl9_openmpi4.1.4-sp

Bioscience#

System Build

App

Version

Compiler

rl9c

bwakit

0.7.15

rl9_binary

rl9c

beast

1.10.4

rl9.1_gnu12.2.0

rl9c

fastq

0.8.3

rl9_conda3

rl9c

jellyfish

2.3.0

rl9_binary

rl9c

mixedhtseq

0.1.0

rl9_python2.7

rl9c

qualimap

2.3

rl9_java19.0.1

rl9c

varscan

2.4.6

rl9_java19.0.1

rl9c

trimal

1.4.1

rl9_gnu12.2.0

rl9c

evidencemodeler

2.1.0

rl9_binary

rl9c

relion

4.0.1

rl9_intel2022.3

rl9c

metagem

1.0.5

rl9_conda3

rl9c

root

6.28.0

rl9_conda3

rl9c

mecat2

20190314

rl9_binary

rl9c

bioconductor

3.17

rl9_R4.3.0_bk

rl9c

sbt

1.9.0-RC2

rl9_binary

rl9c

eggnog-mapper

2.1.11

rl9_gnu12.2.0_python3.9

rl9c

circlator

1.5.5

rl9_conda3

rl9c

metasv

0.5.4

rl9_conda3

rl9c

bamUtil

1.0.15

rl9_gnu12.2.0

rl9c

arlequin

3.5.2.2

rl9_binary

rl9c

libsbml

5.19.0

rl9_binary

rl9c

scipio

1.4

rl9_perl_5.36.0

rl9c

macs

3.0

rl9_conda3

rl9c

checkm2

1.0.2

rl9_conda3

rl9c

syri

1.4

el7.9_conda3

rl9c

usearch

11.0.667

rl9_binary

rl9c

reference-based_assembly

2.26.10

rl9_gnu12.2.0

rl9c

racon

1.5.0

rl9_conda3

rl9c

ribodetector

0.2.7

rl9_conda3

rl9c

survivor

1.0.7

rl9_gnu12.2.0

rl9c

lordfast

0.0.10

rl9_gnu12.2.0

rl9c

llvm

16.0.1

rl9_gnu12.2.0

rl9c

lumpy-sv

0.3.1

rl9_conda3

rl9c

agat

1.0

rl9_conda3

rl9c

pyani

0.2.12

rl9_conda3

rl9c

datamash

1.8

rl9_gnu12.2.0

rl9c

diamond

2.1.8

rl9_binary

rl9c

sparsehash

2.0.4

rl9_gnu12.2.0

rl9c

virusdetect

1.8

rl9_perl5.36.0~

rl9c

spades

3.14.1

rl9_binary

rl9c

bbtools

37.62

rl9_conda3

rl9c

mmseqs2

14.7e284

rl9_conda3

rl9c

glog

0.6.0

rl9_gnu12.2.0

rl9c

merfin

1.1

rl9_gnu12.2.0

rl9c

vcf-kit

0.2.9

rl9_conda3

rl9c

fastx_toolkit

0.0.14

rl9_conda3

rl9c

macs

2.2.6

rl9_conda3env

rl9c

gatk

4.1.8.0

rl9_binary

rl9c

repeatscout

1.0.5

rl9_gnu12.2.0

rl9c

ltr_retriever

2.9.4

rl9_binary

rl9c

kat

2.4.2

rl9_gnu12.2.0_python3.11.0

rl9c

metabat

2.12.1

rl9_binary

rl9c

repeatmasker

4.1.4

rl9_perl5.36.0

rl9c

sratoolkit

2.10.7

rl9_binary

rl9c

slurm-drmaa-test

1.1.3

miniconda3

rl9c

cd-hit

4.8.1

rl9_gnu12.2.0

rl9c

htslib

1.16

rl9_gnu12.2.0

rl9c

interproscan

5.59-91.0

rl9_binary

rl9c

speedseq

0.1.2

rl9_gnu12.2.0

rl9c

snippy

4.6.0

rl9_conda3

rl9c

rsem

1.3.3

rl9_conda3

rl9c

longranger

2.2.2

rl9_binary

rl9c

ngstools

1.0

rl9_gnu12.2.0

rl9c

integron_finder

2.0.2

rl9_conda3

rl9c

kmc

3.2.1

rl9_conda3

rl9c

bimbam

1.0

rl9_binary

rl9c

vadr

1.5.1

rl9_perl5.36.0

rl9c

binutils

2.37

rl9_gnu12.2.0

rl9c

emmax

20120210

rl9_binary

rl9c

checkm

1.2.2

rl9_conda3

rl9c

lr_gapcloser

github_commit_156381a

rl9_binary

rl9c

ncbi-blast+

2.13.0

rl9_gnu12.2.0

rl9c

i-tasser

5.1

rl9_binary

rl9c

efficient-apriori

2.0.3

rl9_conda3

rl9c

cellranger

7.1.0

rl9_binary

rl9c

interproscan

5.61-93.0

rl9_binary

rl9c

libXrender

0.9.11

rl9_gnu12.2.0

rl9c

bwtool

1.0

rl9_gnu12.2.0

rl9c

vsearch

2.22.1

rl9_gnu12.2.0

rl9c

bioconductor

3.17

rl9_R4.3.0

rl9c

subset-bam

1.1.0

rl9_binary

rl9c

masurca

4.1.0

rl9_conda3

rl9c

meshclust

3.0.0

rl9_gnu12.2.0

rl9c

smrtlink

8.0

rl9_binary

rl9c

readxplorer

2.2.3

rl9_binary

rl9c

admixture

1.3.0

rl9_binary

rl9c

antismash

6.1.1

rl9_conda3

rl9c

sinto

0.9

rl9_conda3

rl9c

gem-mapper

3.6.1

rl9_gnu12.2.0

rl9c

bx-python

0.9.0

rl9_conda3

rl9c

orthofinder

2.5.4

rl9_binary

rl9c

bioconductor

3.16

rl9_R4.2.0

rl9c

verkko

1.4.1

rl9_conda3

rl9c

longqc

1.2.1

rl9.1_gnu12.2.0

rl9c

quast

5.2.0

rl9_binary

rl9c

circos

0.69-9

rl9_binary

rl9c

virusdetect

1.8

rl9_perl5.38.0

rl9c

canu

2.3

rl9_gnu12.2.0

rl9c

gtotree

1.8.2

rl9_conda3

rl9c

hicexplorer

3.7.3

rl9.1_python3.8

rl9c

phenolyzer

0.4.0

rl9_perl5.36.0

rl9c

abricate

1.0.1

rl9_conda3

rl9c

orthomcl

2.0.9

rl9_conda3

rl9c

phenolyzer

0.4.0

rl9_perl

rl9c

sibelia

3.0.7

rl9_conda3

rl9c

help2man

1.49.3

rl9_gnu12.2.0

rl9c

annotsv

3.2.3

rl9_gnu12.2.0

rl9c

mashmap

2.0

rl9_binary

rl9c

spaceranger

2.0.0

rl9_binary

rl9c

bamtools

2.5.2

rl9_gnu12.2.0

rl9c

fasttree

2.1.11

rl9_gnu12.2.0

rl9c

maker

3.01.03

rl9_conda3

rl9c

adapterremoval

2.3.1

rl9_gnu12.2.0

rl9c

bcftools

1.16

rl9_gnu12.2.0

rl9c

emboss

6.6.0

rl9.1_gnu12.2.0

rl9c

repeatmodeler

2.0.4

rl9_conda3

rl9c

tgt_package

1.07

rl9_gnu12.2.0

rl9c

fastsimcoal2

2.6.0.3

rl9_binary

rl9c

jannovar

0.35

rl9_binary

rl9c

maxbin

2.2.7

rl9_gnu12.2.0

rl9c

mashmap

3.1.3

rl9.1_gnu12.2.0

rl9c

genesis

2.1.2

rl9.1_gnu12.2.0

rl9c

metasv

0.5.4

rl9_python2.7.18

rl9c

smoothxg

0.6.8

rl9_gnu12.2.0

rl9c

fastani

1.33

rl9_gnu12.2.0

rl9c

octeract

4.4.1

rl9_binary

rl9c

star

2.7.10b

rl9_binary

rl9c

slurm-drmaa-test

1.1.3

slurm-drmaa-1.1.3

rl9c

zstd

1.5.4

rl9_gnu12.2.0

rl9c

sratoolkit

2.11.0

rl9_binary

rl9c

picard

3.0.0

rl9_conda3

rl9c

hmmer

3.3.2

rl9_gnu12.2.0

rl9c

spades

3.15.5

rl9_binary

rl9c

ragtag

2.1.0

rl9_conda3

rl9c

supernova

2.1.1

rl9_binary

rl9c

guppy

6.1.7

rl9_binary

rl9c

penncnv

1.0.5

rl9_gnu12.2.0

rl9c

breakseq2

2.2

rl9_gnu12.2.0_python2.7

rl9c

drep

3.4.5

rl9_conda3

rl9c

phyml

3.1

rl9_binary

rl9c

midas

1.3.2

rl9_gnu12.2.0_python3.11

rl9c

graph-tool

2.29

rl9_conda3

rl9c

paup

4.0a

rl9_binary

rl9c

freebayes

1.3.7

rl9_conda3

rl9c

phylophlan

3.0.3

rl9_conda3env

rl9c

quast

5.2.0

rl9_conda3

rl9c

brig

0.95

rl9_binary

rl9c

sickle

1.33

rl9_gnu12.2.0

rl9c

clustalw2

2.1

rl9_gnu12.2.0

rl9c

gepard

1.40.0

rl9_java19.0.1

rl9c

isoseq3

4.0.0

rl9_conda3

rl9c

vcftools

0.1.17

rl9_gnu12.2.0

rl9c

slurm-drmaa

1.2.0

rl9_gnu12.2.0_python3.10

rl9c

velvet

1.2.10

rl9_conda3

rl9c

lordec

0.9

rl9_conda3

rl9c

smartdenovo

1.12

rl9_gnu12.2.0

rl9c

rails

1.4.2

rl9_binary

rl9c

funannotate

1.8.15

rl9_conda3env

rl9c

winnowmap

2.03

rl9_gnu12.2.0

rl9c

barrnap

0.9

rl9_binary

rl9c

vg

1.46.0

rl9_binary

rl9c

kraken2

2.0.7-beta

rl9_gnu12.2.0

rl9c

psipred

4.0.2

rl9_gnu12.2.0

rl9c

pomoxis

0.3.12

rl9_conda3

rl9c

ataqv

1.3.1

rl9_gnu12.2.0

rl9c

arcs

1.2.5

rl9_gnu12.2.0

rl9c

sibeliaz

1.2.5

rl9_gnu12.2.0

rl9c

cytoscape

3.10.1

rl9_binary

rl9c

mutchromseq

2.0

rl9_java19.0.1

rl9c

mothur

1.48.0

rl9_binary

rl9c

hifiasm

0.18.5

rl9_gnu12.2.0

rl9c

arks

1.0.4

rl9_gnu12.2.0

rl9c

libXrender

0.9.11

rl9_intel2022.3

rl9c

spades

3.15.5

rl9_gnu12.2.0

rl9c

cactus

2.1.1

rl9_binary

rl9c

purge_haplotigs

1.1.2

rl9_conda3

rl9c

ucsc

1.04

rl9_binary

rl9c

centrifuge

1.0.4-beta

rl9_gnu12.2.0

rl9c

graphlan

1.1.3

rl9_conda3

rl9c

phylobayes

4.1e

rl9_gnu12.2.0

rl9c

haplomerger2

20180603

rl9_binary

rl9c

seqwish

0.7.8

rl9_gnu12.2.0

rl9c

slr

1.0

rl9_gnu12.2.0

rl9c

plasflow

1.1.0

rl9_conda2

rl9c

deeparg

1.0.2

rl9_conda3env

rl9c

breakdancer

1.4.5

rl9_conda3

rl9c

angsd

0.940

rl9_gnu12.2.0

rl9c

smrtlink

9.0

rl9_binary

rl9c

relate

1.1.8

rl9_binary

rl9c

vt

0.5772

rl9_gnu12.2.0

rl9c

nodejs

18.15.0

rl9_conda3

rl9c

meshlab

2022.02

rl9_binary

rl9c

annotsv

3.3.6

rl9_gnu12.2.0

rl9c

platanus

1.2.4

rl9_binary

rl9c

htseq

2.0.4

rl9_conda3

rl9c

bcbio-nextgen

1.1.5

rl9_python3

rl9c

agrenseq

1.0

rl9_java19.0.1

rl9c

kalign

3.3.5

rl9_gnu12.2.0

rl9c

modeller

10.4

rl9_gnu12.2.0

rl9c

minimap2

2.24

rl9_gnu12.2.0

rl9c

freeimage

3.18.0

rl9_conda3

rl9c

sratoolkit

3.0.2

rl9_binary

rl9c

anchorwave

1.1.1

rl9_gnu12.2.0

rl9c

salsa

2.3

rl9_conda3

rl9c

bedtools

2.30.0

rl9_gnu12.2.0

rl9c

clustalw-mtv

1.82

rl9_gnu12.2.0

rl9c

diamond

2.1.6

rl9_binary

rl9c

mudoger

1.0

rl9_conda3

rl9c

mummer

3.23

rl9_gnu12.2.0

rl9c

krakenuniq

1.0.3

rl9_gnu12.2.0

rl9c

ncbi-blast+

2.13.0

rl9_perl

rl9c

big-scape

1.1.5

rl9_conda3

rl9c

wgs

8.3rc2

rl9_binary

rl9c

merqury

1.3

rl9_binary

rl9c

libtool

2.4.7

rl9_gnu12.2.0

rl9c

tpmcalculator

0.0.3

rl9.1_gnu12.2.0

rl9c

genesis

2.0.3

rl9.1_gnu12.2

rl9c

muscle

5.1.0

rl9_binary

rl9c

expat

2.5.0

rl9_gnu12.2.0

rl9c

bowtie2

2.5.1

rl9_gnu12.2.0

rl9c

genrich

0.6.1

rl9_gnu12.2.0

rl9c

tumme

3.1

rl9_gnu12.2.0

rl9c

vmd

1.9.3

rl9_conda3

rl9c

cactus

2.6.0

rl9_conda3

rl9c

slurm-drmaa

1.2.0

rl9_gnu12.2.0_python2.7

rl9c

npinv

1.24

rl9_binary

rl9c

trimmomatic

0.39

rl9_binary

rl9c

cellranger_arc

2.0.0

rl9_binary

rl9c

virsorter2

2.2.4

rl9_conda3

rl9c

interproscan

5.39-77.0

rl9_binary

rl9c

igv

2.7.2

rl9_binary

rl9c

envi

5.1

rl9_binary

rl9c

rdptools

2.0.3

rl9_java19.0.1

rl9c

mrbayes

3.2.7a

rl9_gnu12.2.0

rl9c

pindel

0.2.5b9

rl9_conda3

rl9c

drmaa

0.7.9

rl9_conda3

rl9c

maven

3.9.1

rl9_binary

rl9c

trimgalore

0.6.5

rl9_binary

rl9c

jumbodb

1.0.1

rl9_gnu12.2.0

rl9c

tobias

0.14.0

rl9_conda3

rl9c

cufflinks

2.2.1

rl9_binary

rl9c

nlr-annotator

0.7b

rl9_java19.0.1

rl9c

jemalloc

5.3.0

rl9_gnu12.2.0

rl9c

kmap

1.0

rl9_perl5.34.0

rl9c

avizo

2021.1

el7.9_binary

rl9c

hifiasm

0.19.5

rl9_gnu12.2.0

rl9c

intervalstats

1.01

rl9_conda3

rl9c

mummer

4.0.0

rl9.1_gnu12.2.0

rl9c

ltr_finder

1.0.7

rl9_gnu12.2.0

rl9c

cnvnator

0.4.1

rl9_singularity

rl9c

corer

1.0b

rl9_gnu12.2.0

rl9c

konclude

0.7.0

rl9_binary

rl9c

fastspar

1.0.0

rl9_gnu12.2.0

rl9c

seqkit

2.4.0

rl9_binary

rl9c

smcpp

1.15.2

rl9_binary

rl9c

relion

5.0-b

rl9.1_openmpi4.1.4

rl9c

mhap

2.1.3

rl9_binary

rl9c

deap

1.3.3

rl9_python3.11.0

rl9c

snakemake

7.32.3

rl9_python3

rl9c

svtools

0.5.1

rl9_conda3

rl9c

vrhyme

1.1.0

rl9_conda3

rl9c

edta

2.1.0

rl9_conda3

rl9c

recycler

0.7

rl9_conda3

rl9c

cytoscape

3.7.2

rl9_binary

rl9c

clustal-omega

1.2.4

rl9_gnu12.2.0

rl9c

flash

1.2.11

rl9_binary

rl9c

prokka

1.14.6

rl9_conda2

rl9c

cnvnator

0.3.3

rl9_singularity

rl9c

hicanu

2.3

rl9_gnu12.2.0

rl9c

seqtk

1.3

rl9_gnu12.2.0

rl9c

mafft

7.505-with-extensions

rl9_gnu12.2.0

rl9c

umi_tools

1.1.4

rl9_python3.11.0

rl9c

bio-python

3.10

rl9_conda3

rl9c

ratt

1.0

rl9_binary

rl9c

likwid

5.2.2

rl9_gnu12.2.0

rl9c

gaas

1.2.0

rl9_conda2

rl9c

miniasm

0.3

rl9_conda3

rl9c

centrifuge

1.0.4_beta

rl9_conda3

rl9c

horovod

0.19.5

rl9_conda3

rl9c

hapcut2

1.3.1

rl9_gnu12.2.0

rl9c

bioconda

cf201901

rl9_python2.7.18

rl9c

cdbfasta

1.0

rl9_gnu12.2.0

rl9c

plink

1.9

rl9_binary

rl9c

rtg-tools

3.12.1

rl9_binary

rl9c

libtiff

4.5.0

rl9_gnu12.2.0

rl9c

isown

2018

rl9_binary

rl9c

ngsplot

2.63

rl9_bioconductor3.17

rl9c

any2fasta

0.4.2

rl9_binary

rl9c

gvcftools

0.17.0

rl9_conda3

rl9c

fastp

0.23.2

rl9_binary

rl9c

quickmerge

0.3

rl9_gnu12.2.0

rl9c

wgdi

0.6.3

rl9.1_conda3

rl9c

eggnog-mapper

2.1.12

rl9.1_conda3

rl9c

trnascan-se

2.0.12

rl9_gnu12.2.0

rl9c

compleasm

0.2.2

rl9_binary

rl9c

agat

1.2.0

rl9.1_conda3

rl9c

uropa

3.1.0

rl9_conda3

rl9c

flye

2.9.1

rl9_gnu12.2.0

rl9c

edyeet

0.3

rl9_gnu12.2.0

rl9c

bioperl

1.7.8

rl9_perl5.32.1

rl9c

metassembler

1.5

rl9_gnu12.2.0

rl9c

kaiju

1.9.2

rl9_gnu12.2.0

rl9c

pymol

2.4.1

rl9_conda3

rl9c

transvar

2.5.10

rl9_conda3

rl9c

straw

0.0.8

rl9_gnu12.2.0

rl9c

minigraph

0.20

rl9_gnu12.2.0

rl9c

lja_assembler

0.2

rl9c_gnu12.2.0

rl9c

nextgenmap

0.5.5

rl9_conda3

rl9c

gatk

4.2.2.0

rl9_binary

rl9c

assembline

1.0

rl9.1_conda3

rl9c

links

2.0.1

rl9_conda3

rl9c

pbmpi

1.8c

rl9_openmpi4.1.4

rl9c

gemma

0.98.5

rl9_binary

rl9c

blasr

5.3.5

rl9_conda3

rl9c

sga

0.10.15

rl9_conda3

rl9c

vep

110.1

rl9_conda3

rl9c

ngmlr

0.2.7

rl9_conda3

rl9c

mothur

1.44.1

rl9_binary

rl9c

interproscan

5.53-87.0

rl9_binary

rl9c

biobambam2

2.0.87

rl9_gnu12.2.0

rl9c

fastviromeexplorer

1.3

rl9_gcc12.2.0_java19.0.1

rl9c

neural-admixture

1.2.4

rl9_conda3

rl9c

cnvnator

0.4.1

rl9_conda3

rl9c

fastviromeexplorer

aeb2a868

kallisto-0.43.1

rl9c

glimpse2

2.0.0

rl9_gnu12.2.0

rl9c

sniffles

2.2

rl9_conda3

rl9c

irep

1.1.14

rl9_conda3

rl9c

bwa

0.7.17

rl9_gnu12.2.0

rl9c

wtdbg2

2.5

rl9_gnu12.2.0

rl9c

hisat2

2.2.1

rl9_binary

rl9c

edena

3.1310

rl9_gnu12.2.0

rl9c

rsem

1.3.3

rl9_R4.3.0

rl9c

bx-python

0.10.0

rl9_conda3

rl9c

cutadapt

4.3

rl9_conda3

rl9c

gala

0.1

rl9_binary

rl9c

genesis

2.1.1

rl9.1_gnu12.2.0

rl9c

ngspice

38

rl9_conda3

rl9c

qctools

v2

rl9_gnu12.2.0

rl9c

kmap

1.0

perl-5.38.0

rl9c

multiqc

1.14

rl9_conda3

rl9c

prinseq

0.20.4

rl9_binary

rl9c

canvas

1.40

rl9_binary

rl9c

gce

1.0.2

rl9_binary

rl9c

nlopt

2.7.1

rl9_gnu12.2.0

rl9c

augustus

3.5.0

rl9_conda3

rl9c

sweed

3.3.1

rl9_gnu12.2.0

rl9c

networkx

2.2

rl9_python2.7.18

rl9c

cellrangeratac

1.2.0

rl9_binary

rl9c

bam2fastx

3.0.0

rl9_conda3

rl9c

cwltool

3.1.20231016170136

rl9_conda3

rl9c

cellranger

5.0.1

rl9_binary

rl9c

dical2

2.0.5

rl9_binary

rl9c

megan

6.24.23

rl9_installer

rl9c

dmd2

2.102.2

rl9_binary

rl9c

bedops

2.4.41

rl9_binary

rl9c

demic

1.0.2

rl9_binary

rl9c

vg

1.32.0

rl9_binary

rl9c

gsalign

1.0.22

rl9_gnu12.2.0

rl9c

fastqc

0.12.0

rl9_binary

rl9c

purge_dups

1.2.5

rl9_gnu12.2.0

rl9c

pasa

2.5.2

rl9_gnu12.2.0

rl9c

chanjo

4.6.1

rl9_conda3

rl9c

tophat2

2.1.1

rl9_conda2

rl9c

hic-pro

3.1.0

rl9.1_conda3

rl9c

arcs

1.2.5

rl9_conda3

rl9c

hifiasm

0.19.8

rl9.1_gnu12.2.0

rl9c

trf

4.09.1

rl9_binary

rl9c

aspera-connect

3.9.6

rl9_conda3

rl9c

kleborate

2.3.2

rl9_conda3env

rl9c

gatk

4.3.0.0

rl9_binary

rl9c

cellranger

6.1.2

rl9_binary

rl9c

das_tool

1.1.6

rl9_gnu12.2.0_R4.3.0

rl9c

cnvkit

0.9.10

rl9_conda3

rl9c

pilon

1.24

rl9_binary

rl9c

genomicdb

1.5.0

rl9_gnu12.2.0

rl9c

ont2cram

2019

rl9_conda3

rl9c

gffcompare

0.12.7

rl9_gnu12.2.0

rl9c

subread

2.0.4

rl9_binary

rl9c

anchorwave

1.2.2

rl9_conda3

rl9c

exonerate

2.4.0

rl9_gnu12.2.0

rl9c

raxml

8.2.12

rl9_gnu12.2.0

rl9c

krona

2.8.1

rl9_conda3

rl9c

trinity

2.15.1

rl9_gnu12.2.0

rl9c

salmon

1.6.0

rl9_binary

rl9c

spaceranger

1.3.1

rl9_binary

rl9c

subread

2.0.2

rl9_binary

rl9c

bracken

2.8

rl9_gnu12.2.0

rl9c

gmap

2021-03-08

rl9_gnu12.2.0

rl9c

pbsuite

15.8.24

rl9_python2.7env

rl9c

binsanity

0.5.4

rl9_conda3

rl9c

ltr_detector

2019

rl9_gnu12.2.0

rl9c

beagle

5.4

rl9_java19.0.1

rl9c

sspace-standard

3.0

rl9_binary

rl9c

sve

0.1.0

rl9_gnu12.2.0

rl9c

pb-assembly

0.0.8

rl9_conda3

rl9c

graphviz

2.49.0

rl9_gnu12.2.0

rl9c

crypt-ssleay

0.72

rl9_perl5.36.0

rl9c

juicer

1.6

rl9_binary

rl9c

bcl2fastq2

2.20

rl9_gnu12.2.0

rl9c

ceres-solver

2.1.0

rl9_gnu12.2.0

rl9c

pbjelly

15.8.24

rl9_conda3

rl9c

fasttext

0.9.2

rl9_gnu12.2.0

rl9c

c-i-tasser

1.0

rl9_binary

rl9c

mercurial

6.3.2

rl9_conda3

rl9c

bandage

0.8.1

rl9_binary

rl9c

polyphen2

2.2.3r407

rl9_binary

rl9c

graph-tool

2.25

rl9_conda3

rl9c

rmats

4.1.2

rl9_python3

rl9c

metaphlan4

4.0.6

rl9_conda3

rl9c

iq-tree

2.0.5

rl9_binary

rl9c

sambamba

1.0

rl9_conda3

rl9c

yasm

1.3.0

rl9_gnu12.2.0

rl9c

udunits

2.2.28

rl9_gnu12.2.0

rl9c

prodigal

2.6.3

rl9_gnu12.2.0

rl9c

genometools

1.6.3

rl9_gnu12.2.0

rl9c

meme

5.5.1

rl9_openmpi4.1.4

rl9c

libgtextutils

0.7

rl9_conda3

rl9c

scala

2.12.4

rl9_binary

rl9c

wgsa

0.76

rl9_perl5.36.0_gnu12.2.0

rl9c

shasta

0.10.0

rl9_binary

rl9c

likwid

5.2.2

rl9_intel2022.3

rl9c

samtools

1.16.1

rl9_gnu12.2.0

rl9c

ngs-suite

1.2.0

rl9_gnu12.2.0

rl9c

cif2cell

2.0.0a3

rl9_python3.11.0

rl9c

toulligqc

2.4

rl9_python3.11.0

rl9c

uqtk

3.1.3

rl9_gnu12.2.0

rl9c

unicycler

0.5.0

rl9_conda3

rl9c

msmc2

2.1.4

rl9_gnu12.2.0

rl9c

blat

2023

rl9_binary

rl9c

leafcutter

0.2.9

rl9_gnu12.2.0

rl9c

hicup

0.8.2

rl9_binary

rl9c

kraken2

2.1.3

rl9_gnu12.2.0

rl9c

proovread

2.14.1

rl9_gnu12.2.0

rl9c

megahit

1.2.9

rl9_binary

rl9c

treemix

1.13

rl9_gnu12.2.0

rl9c

poplddecay

3.42

rl9_gnu12.2.0

rl9c

graphtyper

2.7.1

rl9_binary

rl9c

crop

1.33

rl9_gnu12.2.0

rl9c

checkv

1.0.1

el9.1_conda3

rl9c

anvio

7.1

rl9_python3

rl9c

drep

3.4.2

rl9_conda3

rl9c

cytoscape

3.9.1

rl9_conda3

rl9c

repeatmodeler

2.0.4

rl9_perl5.38.0

rl9c

soapdenovo2

242

rl9_gnu12.2.0

rl9c

deeparg

1.0.2

rl9_gnu12.2.0_python2.7

rl9c

gtdb-tk

2.3.2

rl9.1_conda3

rl9c

c-i-tasser

1.0

C-I-TASSER-1.0

rl9c

svim

1.4.2

rl9_conda3

rl9c

polyphen2

2.2.2r405c

rl9_binary

rl9c

lima

2.7.1

rl9_conda3

rl9c

ngsepcore

4.3.1

rl9_java19.0.1

rl9c

toil

5.12.0

rl9_conda3

Computational Fluid Dynamics#

System Build

App

Version

Compiler

rl9c

gerris

131206

rl9_openmpi4.1.4

rl9c

ansys

23R1-fluids

rl9_binary

rl9c

geochemfoam

5.0

rl9_singularity

rl9g

paraview

5.11.0

gnu11.2.1-egl

rl9c

geochemfoam

5.0

rl9_gnu12.2.0

rl9c

ansys

22R1-fluids

rl9_binary

rl9c

openfoam

2212

rl9_gnu12.2.0

rl9c

openfoam

2206

rl9_gnu12.2.0

rl9c

openfoam

4.x

el7.9_gnu6.4.0

rl9c

openfoam

10.0

rl9_gnu12.2.0

rl9c

openfoam

9.0

rl9_gnu12.2.0

rl9c

geochemfoam

4.8

rl9_gnu12.2.0

rl9g

paraview

5.11.0

gnu11.2.1-mesa

rl9c

ansys

22R2-fluids

rl9_binary

Data Science#

System Build

App

Version

Compiler

rl9g

machine_learning

2024.01

rl9_cudnn8_cuda11.8_py3.9_env

rl9g

machine_learning

2023.09

rl9_cudnn8_cuda11.8_py3.9_env

rl9g

machine_learning

2023.01

rl9_cudnn8_cuda11.8_py3.9_env

rl9g

machine_learning

2024.01

rl9_cudnn8_cuda11.8_py3.10_env

Others#

System Build

App

Version

Compiler

rl9c

boost

1.80.0

rl9_gnu12.2.0

rl9g

boost

1.83.0

rl9_gnu12.2.0_openmpi4.1.4

rl9c

hdf5

1.12.2

rl9_gnu12.2.0_ompi4.1.4

rl9g

etsf_io

1.0.4

rl9_intel22

rl9c

xz

5.4.0

rl9_gnu12.2.0

rl9g

boost

1.83.0

openmpi-4.1.4-gcc-11.3.0

rl9c

libgd

2.2.5

intel22

rl9c

mopac

22.1.0

rl9_gcc11.3.1

rl9c

libtogl

2.0

rl9_binary

rl9c

bionano

3.7.1

rl9_binary

rl9c

reframe

4.4.1

rl9_binary

rl9g

hdf5

1.14.3

gnu11.3.0-openmpi4.1.4

rl9c

readline

6.3

rl9_gnu12.2.0

rl9c

libxc

4.3.4

intel22

rl9c

mrcc

2017-09-25

ompi414_intel22

rl9c

foamextend

4.0

rl9_gnu12.2.0

rl9c

fftw

3.3.10

rl9_gnu12.2.0_ompi4.1.4-ldp

rl9c

octave

8.3.0

rl9_gnu12.2.0

rl9c

texinfo

7.0

rl9_gnu12.2.0

rl9g

go

1.19.4

rl9_binary

rl9c

cgal

4.14.2

rl9_gnu12.2.0

rl9g

fftw

3.3.10

fftw-3.3.10

rl9c

zlib

1.2.13

rl9_intel2022.3

rl9c

curl

7.86.0

rl9_intel2022.3

rl9c

turbomole

6.6

rl9_binary

rl9c

reframe

4.1.1

rl9_binary

rl9c

pstoedit

4.0

rl9_gnu12.2.0

rl9c

xsorb

1.0

rl9_gnu12.2.0

rl9c

readline

7.0

rl9_gnu12.2.0

rl9c

gdal

3.5.1

rl9_anaconda3env

rl9g

fftw

3.3.10

rl9_gnu11.3_ompi4.1.4_dp

rl9c

hdf5

1.12.2

rl9_intel2022.3_ompi4.1.4

rl9g

gdrcopy

2.3

rl9_cuda11.8.0

rl9c

gifsicle

1.94

rl9_gnu12.2.0

rl9c

gaussian09

d.01

rl9_binary

rl9c

stringtie

2.2.1

rl9_gnu12.2.0

rl9c

libpng

1.6.38

rl9_intel2022.3

rl9c

vaspkit

1.4.1

rl9_binary

rl9g

sparskit2

20190610

rl9_intel22

rl9g

libgd

2.2.5

rl9_intel22

rl9c

etsf_io

1.0.4

intel22

rl9c

bionano

solve3.4

rl9_binary

rl9c

ucx

1.13.1

rl9_gnu11.2.1

rl9c

gdal

3.6.2

rl9_gnu12.2.0

rl9g

dualsphysics

5.2.269

rl9_gnu11.3.0_cuda11.7

rl9c

pyprocar

5.6.6

rl9_binary

rl9g

boost

1.84.0

rl9_gnu11.3.0_openmpi4.1.4

rl9c

dssp

4.2.2.1

rl9_gnu12.2.0

rl9c

curl

7.86.0

rl9_gnu12.2.0

rl9c

mpfr

4.1.1

rl9_gnu12.2.0

rl9c

libxml2

2.9.14

rl9_conda3

rl9g

libxc

4.3.4

rl9_intel22

rl9c

mesagl

17.3.9

linux-x86_64_gcc-8.2

rl9c

cgal

5.5.2

rl9_gnu12.2.0

rl9c

fhiaims

210716_2

ompi414_intel22

rl9c

tcl

8.6.13

rl9_intel2022.3

rl9g

imagemagick

7.1.1

rl9_gnu12.2.0

rl9c

pfft

20230206

ompi414_intel22

rl9g

lapack

3.11.0

rl9_gnu11.3.0

rl9g

nvidia_sdk_nvhpc

22.11

rl9_binary

rl9c

gsl

2.7.1

rl9_intel2022.3

rl9c

fftw

3.3.10

rl9_intel2022.3_ompi4.1.4-dp

rl9c

sparskit2

20190610

intel22

rl9c

fftw

3.3.10

rl9_gnu12.2.0_ompi4.1.4-dp

rl9c

libpng

1.6.38

rl9_gnu12.2.0

rl9c

turbomole

7.1

rl9_binary

rl9c

tcl

8.6.13

rl9_intel2022

rl9c

lapack

3.11.0

rl9_intel2022.3

rl9c

fftw

3.3.10

rl9_intel2022.3_ompi4.1.4-sp

rl9c

fftw

3.3.10

rl9_intel2022.3_ompi4.1.4-ldp

rl9c

stringtie

1.3.5

rl9_gnu12.2.0

rl9c

foamextend

4.0

el7_gnu6.4.0

rl9c

libxc

4.3.4

rl9_gnu12.2.0

rl9c

psolver

1.9.3

ompi414_intel22

rl9c

libgd

2.2.5

rl9_gnu12.2.0

rl9c

atk

2019.03sp1

rl9_binary

rl9c

vaspkit

anaconda3

x86_64-conda_cos7-linux-gnu

rl9c

gsl

2.7.1

rl9_gnu12.2.0

rl9c

adf

2019.301

rl9_binary

rl9g

sqlite

3.40.1

rl9_gnu12.2.0

rl9c

geos

3.12.1

rl9_gnu11.3.1

rl9c

gsl

2.4

rl9_gnu12.2.0

rl9c

aescrypt

3.16

rl9_gnu12.2.0

rl9c

manta

1.6.0

rl9_binary

rl9c

ams

2022.103

rl9_binary

rl9c

fftw

3.3.10

rl9_gnu12.2.0_ompi4.1.4-sp

rl9c

dualsphysics

5.2.269

rl9_gnu12.2.0

rl9c

boost

1.80.0

rl9_gnu12.2.0_openmpi4.1.4

rl9c

ams

2023.103

rl9_binary

rl9c

vaspkit

anaconda3

x86_64-conda-linux-gnu

rl9c

mstor

2022

rl9_intel2022.3

rl9c

zlib

1.2.13

rl9_gnu12.2.0

rl9c

spglib

1.16.2

rl9_gnu12.2.0

rl9c

bzip2

1.0.8

rl9_gnu12.2.0

rl9g

zlib

1.3

rl9_gnu11.3.0

rl9c

pcre2

10.40

rl9_gnu12.2.0

rl9g

boost

1.83.0

boost-1.83.0

rl9c

cgal

5.5.1

rl9_gnu12.2.0

rl9c

readline

8.2

rl9_gnu12.2.0

rl9c

blas

3.11.0

rl9_intel2022.3

rl9c

qt

5.15.5

rl9_gnu12.2.0

rl9c

lapack

3.11.0

rl9_gnu12.2.0

rl9g

tcltk

8.6.7

rl9_binary

rl9g

nvidia_sdk_nvhpc

23.1

rl9_binary

rl9g

gaussian16

c.02

rl9_binary

rl9g

fftw

3.3.10

rl9_gnu11.3_ompi4.1.4_sp

rl9c

perturbo

2.2.0

rl9_intel2022.3

rl9c

cgal

4.13

rl9_gnu12.2.0

rl9c

blas

3.11.0

rl9_gnu12.2.0